Six readers
| reader | found | score |
|---|---|---|
| genetics Open Targets | no genetic evidence; overall 0.10 from other evidence | 0.00 |
| cell type Human Protein Atlas | cell type enhanced in microglia (31 nCPM) | 1.00 |
| chemistry Open Targets | a small-molecule pocket: adu-s100 | 0.60 |
| trials ClinicalTrials.gov | no Parkinson's trials on record: an open field | 1.00 |
| literature PubMed | 2 Parkinson's papers of 264 | 0.85 |
| pathways Reactome | 8 pathways; mostly immune signalling | 0.90 |
Knock down and overexpress STING1 in microglia; measure IL-1β and TNF release and surface HLA-DR and uptake and clearance of α-synuclein fibrils and NLRP3 inflammasome activation (IL-1β release).
- Cell type
- microglia
- Direction
- Both arms: public data does not say which way helps.
- Molecular readout
- IL-1β and TNF release and surface HLA-DR
- Functional readout
- uptake and clearance of α-synuclein fibrils and NLRP3 inflammasome activation (IL-1β release)
- Rule-out
- If neither arm moves IL-1β by 20% or more against non-targeting and empty-vector controls, across three independent differentiations, the hypothesis is wrong.
- Lab request
- CRISPRi knockdown and lentiviral overexpression of STING1 in iPSC-derived microglia (iMGL); n = 3 differentiations; readouts: IL-1β and TNF release and surface HLA-DR; uptake and clearance of α-synuclein fibrils and NLRP3 inflammasome activation (IL-1β release). Controls: non-targeting guide, empty vector. About 8 to 10 weeks, most of it differentiation.
Sealed predictions
- STING1 in dopamine neurons, braakn/a → n/areceipt 2557
- STING1 in microglia, braakn/a → n/areceipt 2556
Swarm cases
receipt 2557: STING1 in dopamine neurons, braak
- cell type
- STING1 is not measured in dopamine neurons; looking elsewhere.
- cell type
- no other cell group does better.
- axis
- no measure beats "tracks Braak Lewy-body stage" for STING1 in dopamine neurons.
case closed: nothing better to follow up.
receipt 2556: STING1 in microglia, braak
- cell type
- STING1 is not measured in microglia; looking elsewhere.
- cell type
- no other cell group does better.
- axis
- no measure beats "tracks Braak Lewy-body stage" for STING1 in microglia.
case closed: nothing better to follow up.
Receipts
loading the receipts