Six readers
| reader | found | score |
|---|---|---|
| genetics Open Targets | no genetic evidence; overall 0.35 from other evidence | 0.00 |
| cell type Human Protein Atlas | group enriched, including oligodendrocyte progenitor cells; strongest in ependymal cells | 0.75 |
| chemistry Open Targets | compounds already reach it: pilaralisib, pictilisib, omipalisib +21 | 0.90 |
| trials ClinicalTrials.gov | no Parkinson's trials on record: an open field | 1.00 |
| literature PubMed | 2 Parkinson's papers of 310 | 0.85 |
| pathways Reactome | 48 pathways; mostly immune signalling | 0.90 |
Knock down and overexpress PIK3R2 in oligodendrocytes; measure IL-1β and TNF release and surface HLA-DR and α-synuclein uptake and myelin basic protein output under oxidative stress.
- Cell type
- oligodendrocytes
- Direction
- Both arms: public data does not say which way helps; existing compounds already reach the inhibition arm.
- Molecular readout
- IL-1β and TNF release and surface HLA-DR
- Functional readout
- α-synuclein uptake and myelin basic protein output under oxidative stress
- Rule-out
- If neither arm moves IL-1β by 20% or more against non-targeting and empty-vector controls, across three independent differentiations, the hypothesis is wrong.
- Lab request
- CRISPRi knockdown and lentiviral overexpression of PIK3R2 in iPSC-derived oligodendrocytes; n = 3 differentiations; readouts: IL-1β and TNF release and surface HLA-DR; α-synuclein uptake and myelin basic protein output under oxidative stress. Controls: non-targeting guide, empty vector. About 8 to 10 weeks, most of it differentiation.
Sealed predictions
- PIK3R2 in dopamine neurons, braakn/a → n/areceipt 0877
- PIK3R2 in oligodendrocytes, braakn/a → n/areceipt 0876
Swarm cases
receipt 0877: PIK3R2 in dopamine neurons, braak
- cell type
- PIK3R2 is not measured in dopamine neurons; looking elsewhere.
- cell type
- no other cell group does better.
- axis
- no measure beats "tracks Braak Lewy-body stage" for PIK3R2 in dopamine neurons.
case closed: nothing better to follow up.
receipt 0876: PIK3R2 in oligodendrocytes, braak
- cell type
- PIK3R2 is not measured in oligodendrocytes; looking elsewhere.
- cell type
- no other cell group does better.
- axis
- no measure beats "tracks Braak Lewy-body stage" for PIK3R2 in oligodendrocytes.
case closed: nothing better to follow up.
Receipts
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