parkinson, Parkinson's research notebook

Six readers

reader	found	score
genetics Open Targets	no genetic evidence; overall 0.01 from other evidence	0.00
cell type Human Protein Atlas	cell type enhanced in oligodendrocytes (203 nCPM)	1.00
chemistry Open Targets	hard to drug	0.00
trials ClinicalTrials.gov	no Parkinson's trials on record: an open field	1.00
literature PubMed	1 Parkinson's papers of 172	0.91
pathways Reactome	in no curated pathway	0.00

No case: the score is under the bar. Receipt 10919

PACS2 in oligodendrocytes, braak-0.44 (p 0.234) → +0.35 (p 0.360)receipt 10927
PACS2 in dopamine neurons, braak-0.29 (p 0.456) → -0.65 (p 0.058)receipt 10928

receipt 10928: PACS2 in dopamine neurons, braak

power: full sample -0.38 (p 0.118, n 18), 95% CI -0.72 to +0.10. the interval is wide: not enough donors to tell.
confounder: adjusted for sex: -0.47 (p 0.047, n 18). holds up.
composition: dopamine neurons share of nuclei vs axis +0.05 (p 0.854); controlling for it: -0.47 (p 0.047, n 18). not the mix.
skeptic: leave-one-out range -0.58 to -0.31, sign flips 0; without severely affected donors -0.38 (p 0.118, n 18). fragile.
cell type: no other cell group does better.
axis: no measure beats "tracks Braak Lewy-body stage" for PACS2 in dopamine neurons.

case closed: nothing better to follow up.

receipt 10927: PACS2 in oligodendrocytes, braak

power: full sample -0.15 (p 0.544, n 18), 95% CI -0.58 to +0.34. the interval is wide: not enough donors to tell.
confounder: adjusted for sex: -0.28 (p 0.254, n 18). does not hold up.
composition: oligodendrocytes share of nuclei vs axis +0.03 (p 0.915); controlling for it: -0.28 (p 0.261, n 18). could be the mix.
skeptic: leave-one-out range -0.32 to -0.07, sign flips 0; without severely affected donors -0.15 (p 0.544, n 18). fragile.
cell type: no other cell group does better.
axis: no measure beats "tracks Braak Lewy-body stage" for PACS2 in oligodendrocytes.

case closed: nothing better to follow up.

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